Facebook has also requested Administrative Civil Judge Praveen Singh to remove its name from the case.
In its reply to the court which was made available on Tuesday, Facebook said: "The plaintiff has filed the present suit with ulterior motives to harass Facebook."
The company called the suit a "gross abuse of the process of law".
Also read: Suit on offensive content motivated: Yahoo
The court was hearing a petition of Mufti Aijaz Arshad Qasmi, an Islamic researcher linked to a website run by Islamic Peace Foundation of India, who sought the removal of "objectionable content" from websites.
Earlier, Yahoo India, which is also a party to the case, had termed the suit as "motivated".